As
Desert_AIP stated, its all or nothing for EOL on the Omni Pro II. If the setting is off, you use none, if its on, you need them on all zones. I'm not sure I understand your comment about them not being needed on burglar zones. It doesn't appear you fully understand why EOL resistors are used. You place EOL resistors in series at the motion sensors or window sensors. This allows the panel to detect wiring faults. Should a cable be pinched and the two wires become shorted together, the panel will know because the 1000 ohm EOL resistor will no longer be "seen" by the panel. I highly would recommend you use EOL resistors, and if at all possible, put them as close to the sensor as possible. Don't put them in the panel, where they basically do nothing. Its very good practice to use EOL resistors on all zones.
If you decide NOT to use EOL resistors, that is fine, not a good idea, but fine. The panel will no longer correctly detect most wire faults. If a cable is pinched and shorted, your basically out of luck, the panel won't tell you. When someone breaks in on through that window or sensor, no alarm.
Also, back to your original comment:
The other PIRs seem to fluctuate between 128 (secured) 95(Trouble) and 253 (Not Ready) even when unarmed, depending on whether someone walks in front of them..
It is normal for a zone (armed or not) to fluctuate between secure (128) and not ready (253) when someone triggers it. They are always watched, armed or not. It shouldn't be trouble (95). Don't believe that one unless it stays at 95 for more than a second. If it does, you may have a wiring problem.