I'm just in the process of contacting Steven Goodwin (Minerva) and see if I can get his take on this on these forums.
The HydrA (NAC) will have a USB port although it's purpose is a little vague at the moment, it's there like early HDTVs used to advertise HD ready.
As for what's inside the NAC it's currently as follows. I'm also thinking there is no reason to load the NAC up with software (bloatware) that's not needed for the task at hand. It would only need to support the protocols of things it's actually going to communicate with. An HVAC NAC would be identical hardware wise to a HA or sprinkler system NAC but would have different firmware. Modular programming, it's common on your PC but seems very uncommon on embedded devices.
Flash 512Kb, SRAM 128Kb, ~ 75MIPs, RTCC (not battery backed up but working on a supercap solution)
Ethernet
Two universal serial ports RS232, 422, 485 *RS232 mode can be split into a dual RX, TX pair with a cable. +5V on pin 9
XBee ZB (S2) ZigBee module
Three relays, 120VAC @ 2A should do the trick plus simple RC snubbers.
Phoenix header for Four GPIO (depending on what's left A/D, PWM, CCP, interrupt...)
IR inputs on CD line or either RS232 port (capture mode, handy for capturing PWM data) using external IR adapter (TSOP1138 with a couple of parts on a DE9 socket, similar to the GC-100)
Three IR outputs (programmable modulation)
USB OTG port
Four bit generic RJ6 socket with +5V designed for simple bit bashed I/O or relay driver expansion.
DIP switch or jumpers for setup, serial port mode, termination and biasing (the bias & terminating resistors could also be done inside a DE9...)
9V to 35V operation, a switchmode regulator to 5V @ 2A (relays, external I/O) and 3.3V for the logic.
Possibly the "Sparkfun version" of Power Over Ethernet capable.
As with anything there are tradeoffs, keeping it simple yet practical is always a balancing act.
Example I could add an SD card but that would mean giving up a serial port, the USB OTG can support a Flash drive and I still say give the horsepower and storage to a cheap & cheerful Linux box but leave the connectivity to me
