I think you're missing the point 123.
The alarm panel and a separate aux power supply need to share a common negative (ground) which is different than an EG, if you are powering bus devices off of it, however is isn't necessary if you are only powering protective devices.
In the case of surge protection, you would need a building ground to connect the surge protection to and the protectors would be grounded to that as close as practicable following normal ground and surge methods...the most important is that the path to ground be shorter than the cabling feeding to the surge, you don't want to make tight wire bends, stuff like that.
The panel is not referencing the EG source at any point, it's actually recommended to NOT connect the M1 to an EG and the only purpose of connecting the panel to the EG here is for suppression purposes, which should be installed on the AC mains feeding the main panel, telco connection, any data lines leaving the building (required if installing fire alarm) or any IDC circuit for fire alarm leaving the building. Aux supplies should also have their mains connection surge protected as well. IMHO, the connection for the XEP should really have a surge as well. In the case of the panel surges, those would be bonded together, however the data leaving the building would be surged as noted above.