I am experiencing similar behavior with my UPB setup. Performance was consistently reliable until I added my 19th or 20th switch and began to use a large number of links between a couple of HA room controllers and several of switchs.
The UPB switches always work reliably when controlling their own loads, but links to other devices seem to be the problem. Programming with Upstart however, requires moving to different plugs in the house in order to reach certain devices. I am somewhat concerned as I have plans to add approx 14 more devices, tons of links, and try some neat things with my M1G.
I do occasionally see noise via Upstart so I had a SA junction mounted phase coupler installed yesterday. However, the coupler doesn't appear to work correctly (I still have the same problem).
The "line A" and "line B" led's come on, but not the "surge" led. My electrician verified that the coupler was installed IAW SA's instructions. I have contacted SA' techsupport for assistance.
Hopefully, SA will be able to help me resolve the phase coupler problem and life will be good.